“VCCIO is now tied to 3.3V through a solder jumper. You have the option of clearing this jumper and tying the VCCIO pin to 5V or any other IO voltage you need.”
I could just desolder the jumper as highlighted in the image and then pass the VCCIO to the 5v pin on the domino?
For the FT232 Breakout board, that should be OK too, no need to modify anything.
They usually have 3V3 and 5V version. But the 3V3 version can be used with 5V.
I have 2 of those similar 3v3-FT232 breakout board, and use to do upload the sketch to 5V Arduino and have no problem at all. And I still use these 2 FT232 boards to do the Serial Com. on FEZ without any problem.