It seems that my last post freaked out the thread about the new Hydra SDK. The log file I posted was apparently too much for it to handle 
Going to try again here except eliminating a lot of the “erasing…” entries.
The log appears to me that the firmware update works. However, when I do a ping it is coming back as TinyBooter instead of TinyCLR. Ideas?
-I- Waiting ...
-I- TCL platform : Windows NT
-I- SAM-BA CDC 2.10 on : windows
-I- Retrieved arguments from command line :
-I- argv 0 : com12
-I- argv 1 : at91sam9rl64-ek
-I- argv 2 : TinyBooterLoader.tcl
-I- Connection : com12 (target(comType) = 3)
-I- Board : at91sam9rl64-ek
-I- Traces Level : 4
-I- target(handle) : file22168c8
Read device Chip ID at 0xfffff240 --- get 0x019b03a0
-I- Found processor : at91sam9rl64 (Chip ID : 0x019b03a0)
-I- Command line mode : Execute script file : TinyBooterLoader.tcl
-I---------------------------------
-I- GHI Electronics, FEZ Hydra -
-I- TinyBooter Updater Script -
-I---------------------------------
-I Enable DataFlash
-I- DATAFLASH::Init 0 (trace level : 4)
-I- Loading applet isp-dataflash-fez_hydra.bin at address 0x300000
-I- Memory Size : 0x420000 bytes
-I- Buffer address : 0x302CD8
-I- Buffer size: 0x18C0 bytes
-I- Applet initialization done
-I Erasing DataFlash
-I- Erasing: 0x18C0 bytes at address 0x0
-I- Erasing: 0x18C0 bytes at address 0x18C0
....
-I- Erasing: 0x18C0 bytes at address 0x41D6C0
-I- Erasing: 0x18C0 bytes at address 0x41EF80
-I- Send File FEZ_HYDRA_TINYBOOTER.bin at address 0x8400
GENERIC::SendFile FEZ_HYDRA_TINYBOOTER.bin at address 0x8400
-I- File size : 0xEAC4 byte(s)
-I- Writing: 0x18C0 bytes at 0x8400 (buffer addr : 0x302CD8)
-I- 0x18C0 bytes written by applet
-I- Writing: 0x18C0 bytes at 0x9CC0 (buffer addr : 0x302CD8)
-I- 0x18C0 bytes written by applet
-I- Writing: 0x18C0 bytes at 0xB580 (buffer addr : 0x302CD8)
-I- 0x18C0 bytes written by applet
-I- Writing: 0x18C0 bytes at 0xCE40 (buffer addr : 0x302CD8)
-I- 0x18C0 bytes written by applet
-I- Writing: 0x18C0 bytes at 0xE700 (buffer addr : 0x302CD8)
-I- 0x18C0 bytes written by applet
-I- Writing: 0x18C0 bytes at 0xFFC0 (buffer addr : 0x302CD8)
-I- 0x18C0 bytes written by applet
-I- Writing: 0x18C0 bytes at 0x11880 (buffer addr : 0x302CD8)
-I- 0x18C0 bytes written by applet
-I- Writing: 0x18C0 bytes at 0x13140 (buffer addr : 0x302CD8)
-I- 0x18C0 bytes written by applet
-I- Writing: 0x18C0 bytes at 0x14A00 (buffer addr : 0x302CD8)
-I- 0x18C0 bytes written by applet
-I- Writing: 0xC04 bytes at 0x162C0 (buffer addr : 0x302CD8)
-I- 0xC04 bytes written by applet
-I- Temp file : C:/Users/Ian/.sam-ba.testCompareFile
-I- Compare File : FEZ_HYDRA_TINYBOOTER.bin with memory at address : 0x8400 , for 60100 byte(s)
-I- Read File C:/Users/Ian/.sam-ba.testCompareFile at address 0x8400
GENERIC::ReceiveFile C:/Users/Ian/.sam-ba.testCompareFile : 0xEAC4 bytes from address 0x8400
-I- Reading: 0x18C0 bytes at 0x8400 (buffer addr : 0x302CD8)
-I- Reading: 0x18C0 bytes at 0x9CC0 (buffer addr : 0x302CD8)
-I- Reading: 0x18C0 bytes at 0xB580 (buffer addr : 0x302CD8)
-I- Reading: 0x18C0 bytes at 0xCE40 (buffer addr : 0x302CD8)
-I- Reading: 0x18C0 bytes at 0xE700 (buffer addr : 0x302CD8)
-I- Reading: 0x18C0 bytes at 0xFFC0 (buffer addr : 0x302CD8)
-I- Reading: 0x18C0 bytes at 0x11880 (buffer addr : 0x302CD8)
-I- Reading: 0x18C0 bytes at 0x13140 (buffer addr : 0x302CD8)
-I- Reading: 0x18C0 bytes at 0x14A00 (buffer addr : 0x302CD8)
-I- Reading: 0xC04 bytes at 0x162C0 (buffer addr : 0x302CD8)
Sent file & Memory area content (address: 0x8400, size: 60100 bytes) match exactly !
GENERIC::SendFile GHI_OSH_BOOTSTRAP.bin at address 0x0
-I- File size : 0x25E8 byte(s)
-I- Writing: 0x18C0 bytes at 0x0 (buffer addr : 0x302CD8)
-I- 0x18C0 bytes written by applet
-I- Writing: 0xD28 bytes at 0x18C0 (buffer addr : 0x302CD8)
-I- 0xD28 bytes written by applet
-I---------------------------------
-I- Script Completed -
-I- Please Reset the Device -
-I---------------------------------
